diff --git a/manager.js b/manager.js
index 77f66be..da3f4eb 100644
--- a/manager.js
+++ b/manager.js
@@ -179,7 +179,7 @@ Manage.create = function(CONF) {
 
 	function _mergeFind(config, ours, theirs) {
 		theirs.forEach(function(_newer) {
-			ours.some(function(_older) {
+			var hasCurrent = ours.some(function(_older) {
 				if (_newer.subject !== _older.subject) {
 					return false;
 				}
@@ -193,6 +193,9 @@ Manage.create = function(CONF) {
 				// handled the (only) match
 				return true;
 			});
+			if (hasCurrent) {
+				manage._merge(config, null, _newer);
+			}
 		});
 
 		// delete the things that are gone
@@ -209,7 +212,10 @@ Manage.create = function(CONF) {
 			await manage._save(config);
 			// everything was either added, updated, or not different
 			// hence, this is everything
-			return JSON.parse(JSON.stringify(config.sites));
+			var copy = JSON.parse(JSON.stringify(config.sites));
+			return Object.keys(copy).map(function(k) {
+				return copy[k];
+			});
 		});
 
 		return manage._txPromise;
diff --git a/package.json b/package.json
index 46e7166..19a113b 100644
--- a/package.json
+++ b/package.json
@@ -1,6 +1,6 @@
 {
 	"name": "greenlock-manager-fs",
-	"version": "3.0.2",
+	"version": "3.0.3",
 	"description": "A simple file-based management strategy for Greenlock",
 	"main": "manager.js",
 	"scripts": {